NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208219_1040046

Scaffold Ga0208219_1040046


Overview

Basic Information
Taxon OID3300025625 Open in IMG/M
Scaffold IDGa0208219_1040046 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1219
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026724Metagenome / Metatranscriptome197Y
F073880Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208219_10400461F073880N/AAPFFRATGTPQYRLASTAAGMVIGVWWGLRHPRRLTVLAIASESYTVVFYVPWLARAVQRRRPRIAAGWALVITGSVARLRAAAAEPLR
Ga0208219_10400462F026724AGGMALPILDEARPSGMLGLVPRVAPVVTQAAVGAGHWAAGRRRRALAAWTSAAGYGLVAWGLGTEAPTPAEARQNMQQNMQQNIQRLQREGALREPGPKAPAAAGTPTP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.