Basic Information | |
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Taxon OID | 3300025626 Open in IMG/M |
Scaffold ID | Ga0209716_1000223 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 59110 |
Total Scaffold Genes | 63 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (20.63%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F008239 | Metagenome / Metatranscriptome | 336 | Y |
F023953 | Metagenome / Metatranscriptome | 208 | Y |
F030253 | Metagenome | 186 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209716_100022316 | F023953 | N/A | MKENEKDAIYEIQELILAIAAVAKKYDIEDSFISCVAVGFLDMDSAYLDDEGQERANMNLLSSFSVTDEEELDDLLSYCVEAYRQENEPDPGSIDYWIDLARRNGDIN |
Ga0209716_100022358 | F030253 | N/A | MKNYIRKRAHYRYVNRYLNEIRWEIINTVIISSSTEYTDAVVDHLNNLGSLIRKYERRKRWLKF |
Ga0209716_100022362 | F008239 | N/A | MREILLEMYEKLWNADKDKWAWYAIVKDSLDKLETFNTKEK |
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