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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025626 Open in IMG/M |
| Scaffold ID | Ga0209716_1000635 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31845 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009608 | Metagenome / Metatranscriptome | 315 | Y |
| F013325 | Metagenome / Metatranscriptome | 272 | Y |
| F059026 | Metagenome / Metatranscriptome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209716_100063518 | F009608 | N/A | MYINRYNMKYIKPLNEARPMFQDAPNEFAYLDFKKWAYKNRGKIKKELSGITDGAKLFIKLADIWRWDWANKNAKEWSYLHSTDLAKKDFGRALAVMLKKDDLIIKKQGNKLTDLK |
| Ga0209716_100063544 | F059026 | N/A | MEHFKDYKLFKESLETELITERFSSDILRQFAAQDGKSRWRGNIAKDMQKFASLALDKISDADFTTTTPEAYWKGGDAKNPNKVGFFVDADPGFIKWAKANKKYLPGGLSLGNISKYGVVLSVIRGGIGMYHGFSMDRGSSYSRHRKGTEERYGILAKDYDTNSLYNGWEGAPAAKVTRKNLIDAATRVYVLDLDSLRDKYDVSGLKSDRTNAKLGATALKDAKTIKKENQARYDAILTDRAAMTDVDKSVKDSIELLNQHISDALKAGTMDKYGHLTIGEDPRGRSIKITDGANYIKNLLDDYQRYKDYERQQKEAEDEGRKDNWYSKEVKNYAKRIQDRARAVKAKNYAW |
| Ga0209716_100063546 | F013325 | N/A | MAKTVKMDPTAQGGVVTDPNEIVNENPRKMSEIIADKKAALKKNEDLLRSLQTNEYDIPVGTAKLYKQIMKFLEKEADWGHTTATGLIMLYSNLKEQQSVVREKDWDGIVKLRGTSITIFWTMITSMKGKGFFAARDFVEMMAAFGKDLADVVNKVHEDNKGLRENHAHMAELDKEVNSPDVILDVPIDEYNAAEEELNNLMDEVDPVVETV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |