NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1001603

Scaffold Ga0209716_1001603


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1001603 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16539
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064880Metagenome128N
F085895Metagenome / Metatranscriptome111N
F092352Metagenome / Metatranscriptome107N
F095740Metagenome105N
F103549Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100160311F085895N/AMNVDEALKLLEAKVEEDIHELTPKDRLLFWANLLEFNKAKIQRIPFEPVLDGSAKIIIEYENNTTTAYKDIPEPLDKPKED
Ga0209716_100160320F103549N/AMSCAGIFSGATVSCSDPLAVGIEQRLFLANLEDVASFTFDGTETNMVTAITMKATKTFFEFEGLKQSISTQSEYMPKPYSVGYKHTVDFSVFNVTAEQRRNLEAMAFQPQVAIAYGPNDSSLGNAAFEILGINAGLEIVTNIRIPADNETGGAYRIQLATPDAGGIESQLPSVFWTDPSTGTYASALTAIEALLV
Ga0209716_100160324F095740N/AMEEWLTEHWATLLAALGLGGGGSVVGHKMVDKIQNKKIEKLEIKVSEIDSNIKVNDGVDKQFRKEVDTRLGNIETSLSTLTNHLLSKKK
Ga0209716_10016037F092352N/AMNIIATTLKSIIEAQGLTYLRAANPSDLNELVGNYDLSAGVGVYANLPTVDNITYSQTNNVLMEYGVEVYYLKLSTGTDDTATQIDVILDALKPKVDGMIDKLNASNIIALSSFIDGYELEAIESINITSEVLSGWKLSFVLPIFRDTFECA
Ga0209716_10016039F064880AGGGGGMKKFKIYHDDDIIGGQIPDSWEEITVKQWAAMRPNSEPIELLSIFSNIDLSHLENTRADLSPIIEHIYEKLILNGMNELDHRPRKDLSILGHQIKFPKDLNFERYGQKFMLKKLTQEKDDMREIVADALAIYAQPLIDGKFDGHKLEPIKKAIESLPIVLAWPWCVFFLRSLNALKTTLSIDWQPSQ
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