Scaffold Ga0209716

Basic Information
Taxon OID	3300025626 Open in IMG/M
Scaffold ID	Ga0209716_1002037 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025626 Open in IMG/M

Scaffold ID

Ga0209716_1002037 Open in IMG/M

Source Dataset Name

Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13883
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (92.31%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

13883

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (92.31%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Germany:Helgoland, sampling site Kabeltonne, North Sea

Coordinates

Lat. (^o)

54.1883

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003225	Metagenome / Metatranscriptome	499	Y
F022653	Metagenome / Metatranscriptome	213	N
F022837	Metagenome / Metatranscriptome	212	N
F035746	Metagenome	171	N
F069987	Metagenome	123	N
F092061	Metagenome	107	Y
F100944	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209716_10020371	F022653	AGGAG	MNIFKKLWLFVCLETRGLLSDLISGNLTETEKDNLFWLFVTLWGLVMVTFF
Ga0209716_100203711	F035746	AGG	MKEHKHDFKKLLHVAFKYYKENNCCTVIAVAVAANIGFGKAYHAMKREGRQDRRGAYFAQYESALNKLGYRVEPSEVYMGKTLVTAKRICPKRGTFLIRSAGHVTCIRDGVMVDWAEDRNSRKRVRAVYEVIKN
Ga0209716_100203714	F069987	N/A	MFFTQHKTLTDDVETTVLTIPNGFLLHITYIFVANHGGSTNSIDLWWENSAGVDQMYFFDGTSINAGSREILGGQSETPIFVLHQGEVVKAKAASSGDMEVAFTFNLVNQPSFMNNYS
Ga0209716_100203720	F003225	AGG	MKPELETYFNNYNELFNHEGFKQLIQELSNNATTLADIQTVKDTEDFLFRKGQVAALASVINLESTIAVSREQAEEEEVDD
Ga0209716_10020374	F022837	GAGG	MSQLHLRMQFKDHEYHTTHDGDLILFNLEDYQPYEPENCLHEAYLFCGIIIDDKPVDHYALTASQYDAMTATVEEGSYYEY
Ga0209716_10020377	F100944	GGAG	MSTFRIQRTRKAPVSVTQKTRQNTWNAIFQSMGKGHWFLVTRSNYAKVSQAAATHIKGKYSLYKHPTRKDCHVFMIKEK
Ga0209716_10020378	F092061	AGGAGG	MNKETAEGIIELFVESYTASTKEKRGFAEWRIKAARKGLGLHPEEVRFFEKEAVSRLHFKHWRRKLEQN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209716_1002037

Overview

Ecosystem & Geography

Associated Families

Sequences