NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209716_1003446

Scaffold Ga0209716_1003446


Overview

Basic Information
Taxon OID3300025626 Open in IMG/M
Scaffold IDGa0209716_1003446 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9698
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y
F039045Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0209716_100344617F015342N/AMSVAANMPARNVKGNVQAQDKILYVANKLGLSSLKYMQATTRVIYDQSVTAATQHTLFEGAAARSFPLTNLGANGNQFQVDEALLVEKIAFFIPIDESGQNFQNGGQTSVKFDLIIGNKTVMKDVVIEQAGQQAFYNDGSTPSYVLDLEGVGILIPPQVEFKIQAKSLETRGRAAVSQRLGMYLFGTGVLLNFNTSI
Ga0209716_100344618F025285N/AMSQVGKLNMVNSKLGATMPGQQTTRYIYDSVTAVAGQTNFNLFQTFAGKTDLQSNLTTNKLDSSESMVIKSLFISSNFSQFLTGHMNLNIIVGNQVVLKDFNPAFNASNRGVSFDRLHSGTNLPWLIEVRLLTDIVIPPQVNFKATLELAEGGTLAGENITLGLKGYGTIFSAGSTF
Ga0209716_100344619F000710N/AMPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILLTSTTSAAPGTIVDPTQLRITLVINNDVVIDDDVAYHYAISATGGFSGGFPFFIPFPRRLTGQDTILLKVTNSSGASQILNTTVYYRNEI
Ga0209716_100344620F039045N/AMSIAIPTLIEKDIRCGKARYSTYQTGMGGQSVLVVPDNSYIIIFGYDYSPAGGGLVRTITNGSVGAQSLLTTAGLRAFETQQISFYTGQAFHPFIHHVNCANQIVINNSNPEGVATDIRINSEIDNTPQNRSTYIISNRSVAITVGLVQRVELNSAAAIPVTDKTPGSLTYGGSAATPNVESIYSSNLANPPSQVQPSLKQFQDYGLGGVPGNAQDQAFAVPDQTDGLIEPSQWLQDVFDLTFREAAACNYFLNVHYALYTNTTPEALG
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