NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208147_1003383

Scaffold Ga0208147_1003383


Overview

Basic Information
Taxon OID3300025635 Open in IMG/M
Scaffold IDGa0208147_1003383 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4735
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021292Metagenome219N
F022633Metagenome213N
F067661Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208147_10033833F021292N/AMNHDIITHTPVTLNNGTTVDAYIHKLPSGMYAVHIDYHFEYNTNSTLTRHTTDALWRKQHRDWFRFIRFQRSSTPLPMPKI
Ga0208147_10033837F022633N/AMIDFLKSIGINIGLTIAGFAGALLLAPRMKNWKLQLVAVLSGTLSATYIAPVIIGILNIQAPNIEYGLAFIVGFSGVKITEVLEVRIMKLLKSTPNN
Ga0208147_10033838F067661N/AMATFRKYAFPNEATFTALPVPQGFAVPLGEIDGAYCVDILWDAEPQADYLPFECWPPPVGVHTFLGWDDQYGKDYTERDDVSNTLNED
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