NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209136_1003919

Scaffold Ga0209136_1003919


Overview

Basic Information
Taxon OID3300025636 Open in IMG/M
Scaffold IDGa0209136_1003919 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8207
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026712Metagenome / Metatranscriptome197Y
F030556Metagenome / Metatranscriptome185Y
F035552Metagenome172N

Sequences

Protein IDFamilyRBSSequence
Ga0209136_10039191F030556N/AMANDKTFVAKTSVVSTQYGQIVKIALGPQDFEVLNNAKNEKGWVNLEMKDKRDGGKYIQLQGEYTGKAAPRAVAVNDGDDMPF
Ga0209136_100391914F026712N/AMYWTVNDKEQETLMDLVIRELRIRREPMDNYNIQELAYRQAISDGAMRTDNYFNRMTR
Ga0209136_10039197F035552GGAGMNIKDDLLIKADLDVLYWVLDKVADKVKEDNDFIKVLLQLEQFVEIHKTRTRDMVTYRDTIERAREEYRSLSLKYKGTSELLSETQSLLRKVMNEKMDDDVDF
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