NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209136_1091289

Scaffold Ga0209136_1091289


Overview

Basic Information
Taxon OID3300025636 Open in IMG/M
Scaffold IDGa0209136_1091289 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)900
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F084241Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209136_10912891F002188GGAMIKDLQKLLKQVHEPDEYQLVPHNMTHPLYWIWKIENGKMKDLDIKLRPFRNEHARFDIFINGQYILEKDYIFEQSGKDFHIKFLKVNFAGAYDLQITDDIKLEGDIDLV
Ga0209136_10912892F084241N/AVRTTFTMMVNAYLLPEKFDNELTHKKSFSPKKVVWGMEFDMTGGTGTQSATTQRLYNEYSDIIDFMSIRGSQQSTFVDSETTKLTNVKLPKLPPELEGSFNQDDWFRVYINGVFIPPTKYTYTYDYVTNEIIFIMNTSSPTSPTSLGYTLESTDEIGITGKFIEL
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