NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209197_1000023

Scaffold Ga0209197_1000023


Overview

Basic Information
Taxon OID3300025637 Open in IMG/M
Scaffold IDGa0209197_1000023 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110512 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97088
Total Scaffold Genes105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (27.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017048Metagenome / Metatranscriptome243Y
F031650Metagenome / Metatranscriptome182Y
F049219Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0209197_100002351F017048N/AMFIDNISKKMSNFNYEPSKSSLRADTVVEFVNRSLLDFRMSEIPGMGPASITKFGDHGIYTPAQIVAKFLSFVDSHDVTAQGVCEEFYNWANPIMGKANTHNLTFAMANYCGEHGLFRFE
Ga0209197_100002353F031650GGAMPQMTEIEFDQVKQEYTEAIPEGDAIKAQLKSFNKEQKERHAKIYQYMRENNMMSADLGGITFEREEKTTIPSISIKTLEEIVEDPAIVEQYKRDYANTKESLKVRKPKRQRTDLASTE
Ga0209197_100002382F049219AGGAGGVFVSHNLKKKVILKYKGLFISLINMIQIESDKLLTSRLDSLEQGVCVLDSRVAALDDKIGHVIQMNSEILLQSNQNFRDMREKLDDHRTELKKSIRQIRGSFSTKCQLILFVSGLASWTLFMGWIMWT
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