NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208160_1027652

Scaffold Ga0208160_1027652


Overview

Basic Information
Taxon OID3300025647 Open in IMG/M
Scaffold IDGa0208160_1027652 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1741
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006619Metagenome / Metatranscriptome368Y
F015987Metagenome / Metatranscriptome250Y
F038646Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0208160_10276521F006619N/ALSEPTCSCGSFQRQLSNLSSFQEEIEGFKPWCIHLSWFNKYRELLCKRTDARNASPSGTPEKCVAWWYAPPKDAVSNGRFVLLYTNSGAQAPLSHWRTYKPNEVFTQHHAWDLFFNMMEASYVPFPGISLPQLKSAIKK
Ga0208160_10276522F038646N/AMTDDILDYARQLVANQPMKLRDHHKYDLEIPSDLHWELVKLGAELKMDYEVYAEEVLKMHAEDAISKHITAKAYSDPSWVYKLSLECVEEEDGTMSINIEWDEKDPDLQYWTNLGPKGQENFILTALRSACDSVLSDHDN
Ga0208160_10276525F015987N/AMAQITQAKLKELNVIKLYEHYAALEKSLPLLTPESQELAKAELESCANLRSEKIDRIYYAMASHEDALERIKKEGDLITQAKRHHESQLRSLKSLLNYLRRVLPQDSNK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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