NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208160_1094714

Scaffold Ga0208160_1094714


Overview

Basic Information
Taxon OID3300025647 Open in IMG/M
Scaffold IDGa0208160_1094714 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)782
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.8455Long. (o)-76.4191Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099223Metagenome103N
F101056Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208160_10947142F099223AGGAMAEGHYLTEDSDPRICIMMDQHVFDAINAHANRCREPFSNVARELLRCAVEDGKLDEYYPKKRRRRNQ
Ga0208160_10947143F101056AGGAGGMTDDLKREIQELQQQAKFWQERAEYWRDLWSKAANRLLQVDPELSGPMTTKAEEIHRIAQALKNPDPWKDV

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