NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209385_1006517

Scaffold Ga0209385_1006517


Overview

Basic Information
Taxon OID3300025650 Open in IMG/M
Scaffold IDGa0209385_1006517 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4942
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062295Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209385_10065173F062295N/AMSTLDSFKAKVTSSDFQAQGSVVGSIAVALIVGSTTGSITGTFKVKGADSATSIASKILGITSTNDSIVVGDWAYSRTNAGQWTKGPASGKTLQGFVGSGIVLIDEGAEAKFGRQLHRLTVADMAGVDLSAFGITAGPGQENLSVTSLSFWAEDDGTPAGLSIGASLDQKILNTPSHEKVTLDISIDTLSGVSIAAPTS
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