NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208795_1005496

Scaffold Ga0208795_1005496


Overview

Basic Information
Taxon OID3300025655 Open in IMG/M
Scaffold IDGa0208795_1005496 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4851
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007741Metagenome / Metatranscriptome345N
F019469Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0208795_10054961F019469N/ASKDVDKFCAFDEGAYLDRKPAMVSLAKTYGFKIEPRFYVNTGVFVVTNKVAGLFSQPPLGLFPNHFAEQTWLNVMAHLCDLDLQELDPMFNCMTSVEQHFGLNRYIDAYVIHYAGQSADLDKLADQIEKDEKKLQEEIR
Ga0208795_100549614F007741AGGAGMKQWTNNTGNAHKVDDQILWPRTSYMLPDELSTGIWEDGIPVPHKIKPYYAGRATGGATAVYRAGAIGDSIIATGIVHYLVQESGGVVDVYTPARNLTLYAGLGAKLLPLPPTMEAWDSYDAHVPLDDLFSGQVGDTKL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.