NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208795_1013821

Scaffold Ga0208795_1013821


Overview

Basic Information
Taxon OID3300025655 Open in IMG/M
Scaffold IDGa0208795_1013821 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2771
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameChesapeake Bay, USA
CoordinatesLat. (o)37.0516Long. (o)-76.083Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F043888Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208795_10138211F043888N/AGGTRVEYKSPQIPKDDSFEKYLQYQQQRESIAEQRAAQEKAEAAAKEEARKAAGQAGFAGLRSGVESQLRQGLISYTDATGQLRDYAARYDLTPPETDVAGLTELYTKELLPGRRATGVEAAYEELLGRSATEEEKSKALERFNQGYYSTVQDLKDSLVKGSEYQDKFNQSYLDNYYDTMFGKQTLTAEGKRSGQRTFNFDANLLPSYAEATKARAGVVTPDFKSQFTGTPAEIEEQLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSREVARITKEGDIYSQLVGAFNFS
Ga0208795_10138212F001190GGAMTSTPVGQGTSDDYFDINKFEQLLERLEGSKGRQQRQKSLEGRRDIYAQGLASMMGNF
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