NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208905_1013174

Scaffold Ga0208905_1013174


Overview

Basic Information
Taxon OID3300025661 Open in IMG/M
Scaffold IDGa0208905_1013174 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3284
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043672Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208905_10131742F043672GGAGGMADIRSPEQLATGATIIGSTSFAGQTDGIGSVMGDTWSERIIFDAQPDRVLSKYFIEFTDLMGNNDVTIIIPKIGDIDLMGGRTDYEEGIERVMTKFDTADNITVSLTSADVKLGGCAVSFETASATRVSIVEMAHKQLVRQYLATLESDAASTLETASVNVTTGAGSVFGGTTTADNTVLAANVNNLAAGDVVDVDKLVDMKIRLQNMNFGKRPGEAIMFLHPTTFKQLLKSSQFTNSMEFGDSTVVKKGIIEEYIGVKIEISTLVSAGTTAADTDHDLRGNWGAAGHFIYMIDPTAAAAIVWKEKAKVKVETKYDERKHKILLDAWYKMTVINAKAICLGVYTDA
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