Basic Information | |
---|---|
Taxon OID | 3300025661 Open in IMG/M |
Scaffold ID | Ga0208905_1022290 Open in IMG/M |
Source Dataset Name | Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKS (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2370 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Lake Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F006464 | Metagenome | 372 | Y |
F071809 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208905_10222901 | F071809 | N/A | AVQELDSLLENNNNLDRQVKAVTGGINQSTMFKMLVAQNNNLKCIAKASKNRGTNMNTIASSYDIT |
Ga0208905_10222904 | F006464 | N/A | AELEKALYFCVGVGGNNGKTLILEALADIMPNYVSKIERKTFEKGYTKAHKHLTGTKGKRIIYVEELSSKEQEIETLKEIADGKNIKNEILFGTDELINIMFKLFFLANCQANMKADGGIGNRLRQLCHNSKFNKETTEDNYKTLDFVQDKTLASKLKGEYKHALIKIFLEAGHLYTKTNTLTIPDEFEEAIANALEANDEIKMWFNDYCEYGDDFKCSKKELEDNISKPFREIQNEIQRITNFKYDRNGKYNTNRGGFKGFRIKSDCLVNDC |
⦗Top⦘ |