NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1007755

Scaffold Ga0208898_1007755


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1007755 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5670
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002942Metagenome518Y
F004131Metagenome451Y
F028791Metagenome190N
F052561Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0208898_10077556F004131GAGGMRAKRTTVVADVSQFPFCVMRRQLITPLVREAAELLWPAERRRVTVLLRAPEYWDECRNADLEASEELADICFDLWVGR
Ga0208898_10077557F002942GGTGGMTEEQFTAFCVVLAAVSVPSVSLLFAGAWELWRYAKRVQP
Ga0208898_10077558F028791GGAGMKWWNIAAALAVLAGGAKVQAQGYDNILWSPKIDDIPETPFLPVIQDDKGELLAHSSENIWGMVWTSLPEDGLNNHHKREFSVGDYYYLVENRIPSPVEDDWSLGGTLHHRNGALDFHSARRYYAYASVEQKWAAQQAGWIHIPISADHEGHWVMINGQIVWEIPVGERFTGEITAYIPEMTNTLKLEWGGKNDAADIRIEPARFYPETYSVPEPSLGDLIDLIGNGVGGLIGW
Ga0208898_10077559F052561GGAGMRKLSDIWLIGTQLAKHLQVKKTNLYRAAKSGELETSSTGCGRLATTLQEAERWMRQSRA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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