NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1015007

Scaffold Ga0208898_1015007


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1015007 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3657
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030110Metagenome / Metatranscriptome186N
F064230Metagenome129Y
F064767Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0208898_101500710F064230GAGGMTLKSYLPQMKCTECFKIMVPQFSKEYPHKLDGWSCDCGNSEKAILRERQYTREDDGNNQARVV
Ga0208898_10150072F030110GAGMRKKIEASGYETHVHEVVKKLLDPEQEFDSIEVQRMKSAADLSIKMMAKFMPDLKSTEISGPNGGDLVIAVQRKRFDGDD
Ga0208898_10150074F064767GGAGMDIDEYIIAVRAADSMAKAWRSDVAILSNLKVVRLDEARGPILEIVRWDL
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