NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1030253

Scaffold Ga0208898_1030253


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1030253 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2221
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F038646Metagenome165Y
F091912Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208898_10302531F091912N/AYINQHARQDAQKLGGAYGIKEGVEILPVSRATDTVDVKALPGRDPLTGEDASL
Ga0208898_10302533F002333N/AMSTQLLQQELNCAQSLIYTRTNISRAFQDFDDTEIAGIYLRDDNCLVVRRDGSEQAYPRELIKLAFTNYTNRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWHYSHALGHLTHNAKLQAHWADKFIHVTEQQKVISLLQSDQTDLGHLVAPEGLRLPNRPIDLDSDMEDQESGVPPVHAEPYCSCGSFQRQLLNLSEFQSEIEGFKPWCIHLSWFGKYRELLCKRTEARNASPSGTPEKCVAWWYAPPKDSISDGRFVLLYTNSGAQSPLSHWRTYKAKEVFTQYHAWDLFFNMMEAGYVPFPGVSLPQLKSAIKKS
Ga0208898_10302534F038646N/AMNDADDILEYTRQLAMQPPMTPPKDHDYRLQISPDTHWELVKLAAELRMDPESYAEEILNMHAEDAISKRVVAKAYNDPSWVTKLKLECVDEPDGTMSIHIEWDEKDPDLQYWTNLGAKGQENFILNALRFACNDVLSDHVD
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