NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1031567

Scaffold Ga0208898_1031567


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1031567 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2151
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012117Metagenome / Metatranscriptome283N
F013088Metagenome / Metatranscriptome274Y
F018155Metagenome / Metatranscriptome236Y
F067646Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208898_10315672F012117AGGAGMDILGGMTNPNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPATFKSGWGRYTRADGFEYQWDEKFGVVSPKPAEDFKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLATFWNQMDASSTSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSDGFVIPSWYLDQEAPVEDTFKSPNDGLSDKVAEMVSQNELTDDDIPF
Ga0208898_10315676F067646AGGAMLEWILYFIAAVFGLVFIGAIISLIAAIYILNELD
Ga0208898_10315677F018155GAGMGQNKAAVEKRRKELEAEKLDKQIKTYYFQKGARKHYREITYMSGKVVRTDYDA
Ga0208898_10315678F013088N/AIMDEKTKKALWIPEELHKDIKVFAITNNMNIESATQLLLKLGMVSYKESNHGSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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