NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208898_1061782

Scaffold Ga0208898_1061782


Overview

Basic Information
Taxon OID3300025671 Open in IMG/M
Scaffold IDGa0208898_1061782 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1294
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029422Metagenome188N
F074821Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0208898_10617821F029422N/AMSLLVIGGKYQILVNMGFTERTLKKLTLGYDQRAAYRSQSTSINATQTSVADQETSVNLSEGFVYQEVFEADGVNKSYQVTENNGSLPDTTSDIMVTRNGLFLNDSYIASLDGVNGTLELTFTPDSGDRIVIIWFYRSENEQAVFQEVFIPTGSATFTVTKNEGVLPSSLYKLF
Ga0208898_10617822F074821N/ASTDQSPNPANFQKHWLVFGCEFKSDGIGTTQYYSRKVTITNTGFEYSKPEWTTDSSARVEFAVLVEFDALQTFATVNFQILNLPSIFDYLMGFELLRAYNLNGTEIDLTIGITYLDIQWQIENVYVEFIALGYYQEQNDVYQYAADNDDFASTNYKTGTLIGQGPTQNSPGNLQIWDESNWVNTTNWQLVGNTADKPIGQLTVNEIIKGQLKPVEYFSGMTFVMNDAKGNFLFPHLAIKYKSNYYVFQGGTINLMRDEFTGDWWKISDFS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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