Scaffold Ga0209494_1008297

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209494_1008297

Scaffold Ga0209494_1008297

Overview

Basic Information
Taxon OID	3300025673 Open in IMG/M
Scaffold ID	Ga0209494_1008297 Open in IMG/M
Source Dataset Name	Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4076
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location
Location Name	Hudson Canyon
Coordinates	Lat. (^o)	39.55	Long. (^o)	-72.4	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070217	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209494_10082971	F070217	N/A	YLYIISSFAFSQTVEDTTQTVVDTSQVEPDQIEKISTMVLANRITNVSGFERMIIGDLLGDEMMETSAASMVISENQAKEAMGAAFDPNCFSDSCAISIGKSFNLSNVITFGIINVKKIADSTDVDTLLAVKDSIITATIIMKNFHIGTGQVVSEMTFPFEGDTEKLLMTARRMVWSAVGVEPPPGRFPEDLIDNKVSLKKKILDFYYGTVVPWVQDNTEIAMIIGGIVIISGGWLIFGGGGDDGGFDSPPDFPDGPSSMVPL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.