Scaffold Ga0208162

Basic Information
Taxon OID	3300025674 Open in IMG/M
Scaffold ID	Ga0208162_1000001 Open in IMG/M
Source Dataset Name	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025674 Open in IMG/M

Scaffold ID

Ga0208162_1000001 Open in IMG/M

Source Dataset Name

Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	242718
Total Scaffold Genes	278 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	67 (24.10%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

242718

Total Scaffold Genes

278 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

67 (24.10%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG-VR)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae

(Source: IMG-VR)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Chesapeake Bay
Coordinates	Lat. (^o)	38.9819	Long. (^o)	-76.3716	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Chesapeake Bay

Coordinates

Lat. (^o)

38.9819

Long. (^o)

-76.3716

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042876	Metagenome / Metatranscriptome	157	Y
F043422	Metagenome / Metatranscriptome	156	N
F064679	Metagenome / Metatranscriptome	128	N
F088801	Metagenome / Metatranscriptome	109	N
F103011	Metagenome / Metatranscriptome	101	N
F105257	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208162_1000001120	F105257	N/A	MYMKKLIFSVLLAAVTTAGNAQVSVDAGYTSDFTIAGTARAKDTAVIGITGAKALGKGFTLYGFNYFLPTNDGRSKSYTDHPGSGHQHVDGIKNALETSSQNHFGVGLAYDVNSLGDFSFTADVQAVYHLVNGPLQDSFQYGIGATFDSLPLISKVASVSVYYMEDIDLEMDGFQIGLSRVFENVLVDNVNLTPKAGVYLFDSFDAYYASLRADYTKYAIRPYVQVSYFDNDLTGDLALDNDVQYTVGLNYSF
Ga0208162_1000001227	F043422	N/A	MENIKDILQEKAQDILTEETLQQIEEAFNKKVQLHVEAALVKQDDEYANKLEHLLEAIDIDHSKKLDKVVEAIDKNHSEKMIAVVEKYSKALTQEASEFKSDIVNKVSKYLDIYLEKLVPQKSINEAVKNKRSAKMLSELRGVLAVDAALQKNAIKDAIVDGKARIDESTAKVNEISSAAEKLAKENARLKSQLTLERKCLELSEDKAAFCKKVLSGKSAKFINENFDYTLKMFDKNHEEHLEVLHEQAKRQNSVSKDVDRPTQVISESAKQQSKKSENPYFNAYLGELGKY
Ga0208162_1000001273	F088801	N/A	MSNGTTIVCQVSLKSRPTTYTYLQNKANRLGVSVEDLKKFYVCREVITQVNKGKDVMELVKDVEAFNRLTTEKPWLDIVAMNSRGKTNKRKVTAEAKPDINAVTESVVVQEVKLSDETEAYLKRKEELIGKDNLERIHKQVWGAEEEAEAELRANPF
Ga0208162_10000013	F042876	AGGA	MSVLLFNGFKNDVVLGKTKMTYEVPKVSYDIDDVLYEMEERGLLPQALGDYNIVNEMRGYFGEEKFYEFLEYSMRVWGIELDCLKDIDDEN
Ga0208162_100000131	F103011	N/A	MKCITCSNDIEQPRVEFGMKTCKTCAFRGGDVARYKGVMNWTHKTAPTIQVMSSECYDEQKKYYKPQGARSAVKNFSKHLCA
Ga0208162_100000183	F064679	AGG	MSQAEKSIDLLAPKKSLIDLSDPTQGFDSTLMGYSLSTLMEDVILVRYVDSNEDGTAIVRNGILVPINADTKAWRIGEVLLKGTKCEYVNVGDHVMFPNNLGIPINNLDVDGIGKVKKGLFLNEARIFGIVKPNEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208162_1000001

Overview

Ecosystem & Geography

Associated Families

Sequences