NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1000151

Scaffold Ga0208162_1000151


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1000151 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38050
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (35.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049570Metagenome146Y
F058936Metagenome / Metatranscriptome134N
F068781Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100015130F058936AGGMNMATATAVLATIPASFRGKRQAAGGAEQQLRNLEQQSSCFTTKQLAYGVLYADATGRATGTVSMALRKATPWQAAQLIAAMQAEGLSLISEVASWLNAKALKILA
Ga0208162_10001516F049570N/AMAVTFPSIEPTGRSFTAPRWPTSGITTQSGVTTRRLWGSRPSQAQLSFSFDNITDANAALITQAYNDAKGATTELTLPSALFSGASSTLTTWIDGSATGAGLKWFFSEDPPTVESGSVPGRSNVRVALVAELRL
Ga0208162_10001518F068781N/AMDWKRWIGLPHEFGADPEDGQAADCLLMVWRILDDAGIDHPQFNAYWLEMAQQGHWGELETLWRDGTIEIDNPEDHAVTLFRNGRAGLGVGIVVDGGLLLVHHKRGVAWVPLSLMPSLRFYRFR
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Institute for Fundamental Biomedical Research
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