NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1000161

Scaffold Ga0208162_1000161


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1000161 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37199
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (51.92%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018706Metagenome233Y
F031462Metagenome182Y
F039587Metagenome163N
F095312Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100016121F095312N/AMKYILYSTEEEWDASNDAMNTFFGLPDSHGNERYAEISQVTNEDNSDYGKYIFPVTTQGSFITIDKFNVTEMVEFDPTWSPPDPE
Ga0208162_100016123F018706N/AMIDRASVLGMSGTAATFGLSTFDSMIGIAVGLVTLVYMSIKLYQEVKKK
Ga0208162_100016130F039587N/AMETNLNQYHNLFLTKSEVKEIFRLKSDKALQLFKREFGIRKRGRLFLASDVKKVIALFTEEAA
Ga0208162_100016146F031462AGGVERFCGLAGMTNTLLQATIVRRFIRLGIKPVKAMDMVKRMNEGDAIFIVRNHINLKPLIILTLIKNHIKPNNTDET
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