NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1001955

Scaffold Ga0208162_1001955


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1001955 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10334
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041744Metagenome159N
F045720Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100195512F041744N/ATGEDDLIDRQLEASTRYVETYIGQSLNENRMQAILWDFDDDRDMDAGELRYVLPMGPVSSITSVVGQDLEGANTTLTADTDYYLLTGGRLRIPSPTAYSTYTVDYVAQLSYVTENVKEAIIKICAELYQNRGISVTGTIVSNLKADLNSLLAKERTKLFL
Ga0208162_10019559F045720AGGMKVGVWMPLYGRPLVLRAALESFKAMRIRWRNMGIDLELCVGWSLPDDLTQVVNHYGYPYASVFAENDPLSYKQEAILDIMRGRFDYYLQIGSDDVFIEEADIYYEEALTRGVQYVGCRSVYFIEPSTQRAVSTAMTHTSVNSVFGAGRLWSAEAMDKVLENGPIWPKAMNNQLDLLSEKQFKAAGVWMETFEEERPFIVDIKSETNIWKFKKYQNERAEDYRDIVGRMDKGARAAVNLLHEVSAGANT
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