NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1006867

Scaffold Ga0208162_1006867


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1006867 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5105
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F006845Metagenome / Metatranscriptome363Y
F007417Metagenome351Y
F008281Metagenome336Y
F034894Metagenome173N

Sequences

Protein IDFamilyRBSSequence
Ga0208162_100686711F034894AGGAMNVTFNLMGGGELNIPARAISGFYKDQFTSEVIVEVNGDEYKVRDSLDEIKYILGIAR
Ga0208162_100686717F006845N/AMDLNSYLLQEGFEEFCRHAYERVSAACNYLGIINDETYEDFKERNYASLESDYLNSIDRT
Ga0208162_10068676F001942N/AVPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLCMELNRCMYTIQVKSRRATKQNKFVFAAENSRSQSETYKNYHCDILAFVFFYDDQKRIMFKANTSSQNYFTFDKKAITESMELDSLKETLDNLSSVPVLNPII
Ga0208162_10068678F007417AGAAGGMTRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKENK
Ga0208162_10068679F008281AGGAGMNLMCNTKHGVIQWRWKDSGQPSPEYKSLNHQWWIPKKSEFELVTKVDADIKQEIKDEIWEDMQSDFEYQKSIYKIHKLNKRESK
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