NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208162_1023262

Scaffold Ga0208162_1023262


Overview

Basic Information
Taxon OID3300025674 Open in IMG/M
Scaffold IDGa0208162_1023262 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2354
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018696Metagenome / Metatranscriptome233Y
F019616Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0208162_10232622F019616AGGAGMDVKNPYVRLRELCGVSQKGFATKHSFGKMTMVYLESGMYTRVSDRQSIALGRECNEKGVDAHEVLREEYGATSLNEAYLAWRSEDRKLRAPGVLAKAAPPFVGDEETSPVAQFVKDTAGSLQGFCKLLKVPSITMTRYIRGETSTVPDALWAALEDVKFPHAKALADAQFEWWEGRAL
Ga0208162_10232627F018696GAGGVGEFEQFEGGVAVHLPDGTTKNIATPEGFTDTAFRGTLAAFHTAYLRHGMLPSVDDVHKLWPKLTKKVISGIFGTLEFREALHHRGIQWDPKDGLSMEQQTVLLKLSDPFDRRGLASKLKDLGVPMARFQAWLKQPLYNELYNQHTKANYAEALPAIRQRLIGNAEAGDQRAIELVFAMTGEWNPQQQHLEDARTIVLKVVEAIIKHVKDVKTREAILSDVSMYAGTLTSMNQQKTLE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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