NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209657_1022174

Scaffold Ga0209657_1022174


Overview

Basic Information
Taxon OID3300025676 Open in IMG/M
Scaffold IDGa0209657_1022174 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2624
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011254Metagenome / Metatranscriptome293Y
F070209Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0209657_10221742F011254N/AMQVQIFTKVNASVECVGLDGNTISQSDIITMPNSWHKCYINLHRRDITDIKIGRESIRHCLNSGIDTPYGYEIWLHGDPAQYFSRISECIAQEDLLRFINLKDKYLITESWNEQVNGEFIPHSVKQFFAMGEGPHWYNKDDFSNLPYIEHDGDVDTDVGLDEDLQFTDTKFYGQGRCKSLKPQPVLPTIKLDQIKNKKLRDAMGSFGFTQILQMQYVELQPNSILPIHMDDFTYEDGKDIIDGPTQLYCVLSGDSKGIKFKFKNVGLLDVSKPIFINNRRFVHSLVYTGTVPRGVLLAYGIRTKR
Ga0209657_10221745F070209AGGAGMSRGFLWFAQNNSKTDYVELSITLAKSIKCWNKHNQVCVI
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