NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209719_1031225

Scaffold Ga0209719_1031225


Overview

Basic Information
Taxon OID3300025677 Open in IMG/M
Scaffold IDGa0209719_1031225 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNAS2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2181
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin012(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)43.77Long. (o)142.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033445Metagenome / Metatranscriptome177N
F058173Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0209719_10312253F033445N/AVSLILVLLLLATPLWANDICFSESDASTMVVELEKGRLCEKQIIQYEDATRELTEQIGQLRVQVDAMNVKFDETVKQLEAERKIAEEKDKARIEEIKQAGKPQWTMLFGGFGAGALLVGALILLL
Ga0209719_10312254F058173AGGGGGMTYWIVGGIVLAVIAVIAAYSYGRYHPDPDMVGRLTEQIRQETVKQYEKRIADLDKQLKASQTAYIESQKRYDTIIKKLKEIKDAKNDIKPPQTASELNSRFTALGYTPVGQ
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