NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207933_1018556

Scaffold Ga0207933_1018556


Overview

Basic Information
Taxon OID3300025679 Open in IMG/M
Scaffold IDGa0207933_1018556 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 deep-092012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3027
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020756Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0207933_10185563F020756GGAGVILLVFVVLLWVAVLAPSAWRRFGERQGVGSIDHFHHQLQLLEHAGPKTVAPAYRLHTALPGGRSLEAAPNQAVDSSRPRLVLLRPTDDAAAADVDGGDGSHYERVGVLDRPEPACLPEATVALPAFRREQARRRCTMLLRCLGGVAISTGLIGLFPGMHLAWVITALSGLGALGLVGLMAYAKELEAEQTRRRSRRDVFHSAQSADEMAIAGYPGGWDDDDDFEVPRAAAR
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