NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209306_1177339

Scaffold Ga0209306_1177339


Overview

Basic Information
Taxon OID3300025680 Open in IMG/M
Scaffold IDGa0209306_1177339 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110328 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F093413Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209306_11773391F093413AGGMKFGYYTDRELPVSVALDRAPLKDYKVNSYGYRCPEWTP
Ga0209306_11773392F000413AGAAGLKQFKENIPPALAETMLLDESKLVKYLWKHKALEFRYPKHKGRLDLYADEKYLMMGKLKYPNMFGNKKRMGFMELYIVHRINQRLMNAKGST

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