NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208019_1074116

Scaffold Ga0208019_1074116


Overview

Basic Information
Taxon OID3300025687 Open in IMG/M
Scaffold IDGa0208019_1074116 Open in IMG/M
Source Dataset NameFreshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1104
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)38.9819Long. (o)-76.3716Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012811Metagenome277Y
F096031Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0208019_10741161F012811N/AKYLITESWNVHLDHDFIPTSVKQFFATGEGPYWYHKDDFHNLPYVEHNGHVDTDVVLEEDLEYKDTKFYGEGQCRSLKARPVLPTIKTDQIKNKKLRDAMGGFGFTEILQMQYVELQPNSVLPIHMDDFTYEDGKCVIDGPTQLYCVLSGDSENIKFKFKNVGLIDVSKPIFINNSRFVHSLVYTGAVPRGVLLAYGIKKAN
Ga0208019_10741163F096031GAGGMTKGVLLFCFDTADVPYHKILERCVRLIKKNLQLDITVVTNYET
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