NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209653_1038474

Scaffold Ga0209653_1038474


Overview

Basic Information
Taxon OID3300025695 Open in IMG/M
Scaffold IDGa0209653_1038474 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1945
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005325Metagenome404Y
F034401Metagenome / Metatranscriptome175N
F047656Metagenome149N
F056176Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0209653_10384741F056176N/AQKSLGPLSIKLYEGREILKLVNREPVSPIAESWTEIQEHLVNVT
Ga0209653_10384743F034401GGAGGMALQFDYTALDTEGWTKEQHDTAANFSWTMMAIDMGTVTKENQDEVIFRIMFLQELGLGPWTEKYSLASVKGMVHGMRGYKCNVAQDPRYKFIRRWIKATENWLEGKLNAK
Ga0209653_10384745F047656GAGGMKIKTIEQLKKLMKDLGASEETTSDGFTFIELDSKNLKCPEASKGCKPHGWPRGNPKWKL
Ga0209653_10384746F005325N/AMKKRKIKRGDLLPWFLEDHNTLPAWYIKDCTEFFEWLKQSNKDRKRLN
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