NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209715_1019887

Scaffold Ga0209715_1019887


Overview

Basic Information
Taxon OID3300025699 Open in IMG/M
Scaffold IDGa0209715_1019887 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120503 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3474
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003106Metagenome / Metatranscriptome507N
F010465Metagenome303Y
F071009Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209715_101988711F003106AGGAMTEEKKTKGKAWRMREWGRTQYRNRQAKLRMDGESSKTEASKRMLRVMAPKLGKKVDDFMDTFGGSTEHTTPLFLTFVLDMCPYQIASLALQTFLDNLQFNLPVGRMAYKIGKAFENQARWDKALDTMHPSKLDLLAMDDRSKAMKLKQFYDYEDERFTLWDSKCKAGLGAWLLEEIRIETGLWVMDFATGRQKGHKAERIVRATNAFTDWVSRFDSWKETTRVFKMALPEEPVDWYGLVGGGYSVKHMPPQKLFTGK
Ga0209715_10198876F071009N/AMTTDPENLPSLDDASLDALIQHYLSLKQRLTDNVRVRERLVELQDEQLKRQIESLGNYEPIGDDIKNQLNQ
Ga0209715_10198877F010465N/AMNKPILLDPIDMTEELMFHMFNNDMNRELDGEFLNLYLSLQHYKEYLEKLEND
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