NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209771_1157596

Scaffold Ga0209771_1157596


Overview

Basic Information
Taxon OID3300025701 Open in IMG/M
Scaffold IDGa0209771_1157596 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)692
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084241Metagenome / Metatranscriptome112Y
F104615Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209771_11575961F084241N/AVVNAYLLPEKFDNELTHKKSFSPKKVVWGMEFDMTGGTGTQSATTQRLYNEYSDIIDFMSIRGSQQSTFVDSETTKLTNVKLPKLPPELEGSFNQDDWFRVYINGVFIPPTKYTYTYDYVTNEIIFIMNTSSPTSPTSLGYTLESTDEIGITGKFIEL
Ga0209771_11575962F104615GGAMIKDLQKLLKQVHEPDEYQLVPHNMTHPLYWIWKIENGKMKDLDIKLRPFRNEHARFDIFINGQYILEKDYIF
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