NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208357_1000960

Scaffold Ga0208357_1000960


Overview

Basic Information
Taxon OID3300025703 Open in IMG/M
Scaffold IDGa0208357_1000960 Open in IMG/M
Source Dataset NameArctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21937
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022249Metagenome / Metatranscriptome215Y
F028046Metagenome193Y
F050334Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0208357_100096018F022249GGAGMLKRNGEDCEHPVPNYPGLLTTSEYKAYNVAVPLVAVEVQMFNERTNTLSGIDNQSAQIAEQVAAQSTQGLQSLTVKGTPESAWQIRQTLFKSSRSEMLLCSRDVEENKQFAIVEKFDPRSQYARIHGETDLHMIGTNAFALLQSFVESERAVLQLFRKDIEATVEESLSEKFPNQNHSRVVRAISARCGNQAAVESEKEKPAKNIKIRM
Ga0208357_100096020F050334N/AMEFLAIMGIGTLVAIWVVANLPKSRGLHREINSFEQKPFQTPAWRKDISEVFSTDGFDYLRKLERHQDDPHHWPCPFPPPEPRKEECEYD
Ga0208357_10009604F028046AGGMKLKILLLIAGVAVIGGSVTVLVIQSHSRPLKFSPPESELPAAISNYSKTFKLNTSPPIWAQPQKQGATNGSH
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