NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209602_1005856

Scaffold Ga0209602_1005856


Overview

Basic Information
Taxon OID3300025704 Open in IMG/M
Scaffold IDGa0209602_1005856 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120524 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8458
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (36.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029927Metagenome187Y
F036970Metagenome / Metatranscriptome169Y
F048232Metagenome148N
F063610Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0209602_100585610F048232N/AMTELTHEERVARIMFLREHRRALLVEYCEDGKTTKEKTNLRMEIARVQKKLRELDPDGIFPP
Ga0209602_100585617F063610GAGGMKKIKKLFTVIHERDGKRYQATTWDCTPPGHEDAYELSRTEWKLLSDAPNQLTIF
Ga0209602_10058564F029927N/AMKPVNTKSLFHILCTTLEKLDSAEINVNQASATAKLVGQCTNLLNYELKRAALMTNDDFRHAHRNLESKNFDSLPE
Ga0209602_10058568F036970AGGAMQMNVVPSWGQNTKPMTKYREWFAAVNRAIVSEMAVQKKTQKQLADDLGINVVTLNRKLKDPGLFSVGQLGEICEQLSIDLRNPRTYGTSAD
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