NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208195_1001888

Scaffold Ga0208195_1001888


Overview

Basic Information
Taxon OID3300025713 Open in IMG/M
Scaffold IDGa0208195_1001888 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC077_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21272
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA, Massachusetts, Boston
CoordinatesLat. (o)42.35Long. (o)-70.96Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026554Metagenome / Metatranscriptome197Y
F030433Metagenome / Metatranscriptome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0208195_100188814F030433N/AMSLFTKAKQAAPKKVSAGKDEKVRIKIEDPTFFSKVEKLEQLLDNQKRDKAKSDMLHDELKDLAKDEWVKLYEKNGKNPESVMLEYVKEDTDDTAQLMVIPTDKYISITPARAEELQDLYGETIVEEKTVFSFDNAMIEKYGEIISRMIEDSTDIAEKDKEKIIKATTSFSVAKGTIDNFSKLGNVQELMEATKPVVMLKNIGVIKG
Ga0208195_10018886F026554N/AMKLEINEVYHQYIVRVVIFALFTFKRQIRHPNVYKQSVYSFVEKRLPWKINLLIDTGEKLSKEDERDLILEELLNDKKVDFLKYVCVIFTTPLKQDCMMEIDLTDEKKYEHFLYS
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