NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208458_1031453

Scaffold Ga0208458_1031453


Overview

Basic Information
Taxon OID3300025714 Open in IMG/M
Scaffold IDGa0208458_1031453 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC085_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2271
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameUSA
CoordinatesLat. (o)39.88Long. (o)-75.22Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005744Metagenome / Metatranscriptome391Y
F034940Metagenome / Metatranscriptome173Y
F043951Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0208458_10314532F043951AGGAGMEHLSLGRPIEASLGPRYQCPLCGLKLWTIQAPWTGWQEWYRTEDGRRHYKHSCNIMRDALVMFRRMFGQDW
Ga0208458_10314533F005744AGGAGMDDETFEIIKAGAPDGPPEQTLYRIQHTYSDGSGSRLNVDWDGLLRLHELIHDRIALEGRVCETCDTRGCHRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEMRRLVENRNMED
Ga0208458_10314535F034940AGAAGMGNDCWYYRAQYAGMTKVCMRKSIVERCRIVRFGLCGFPPDSEEWRRCGFAIGMHEIPVMVEQPCS
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