Scaffold Ga0209252_1005293

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209252_1005293

Scaffold Ga0209252_1005293

Overview

Basic Information
Taxon OID	3300025719 Open in IMG/M
Scaffold ID	Ga0209252_1005293 Open in IMG/M
Source Dataset Name	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_135m_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6688
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Saanich Inlet, British Columbia, Canada
Coordinates	Lat. (^o)	48.6	Long. (^o)	-123.5	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078260	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209252_10052936	F078260	AGG	MKNKIYRTLLLSLVSLMGKSMFAEAKPLPDFKGFGTVNWGTKRYKFTLFKNEEKIEMGSVTFRNKLTKDRVILTDEYLLRFEGKPMSLNMTQVCRMDQYLSPVKIEFKGKGSDEFETFKATIKDGQAKIEGQRNGMMEIPKGTVTSSAFMRIVTQLPRFKGATYRYDFALEASEMNLKKEYLVKVIGKETIDSNGPVKCWKISQNGGGIGEQLYWVTDDGILQRVLQDGRKQIDLQTGEPGD

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