NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208784_1022514

Scaffold Ga0208784_1022514


Overview

Basic Information
Taxon OID3300025732 Open in IMG/M
Scaffold IDGa0208784_1022514 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2044
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F010081Metagenome / Metatranscriptome308Y
F042296Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0208784_10225145F042296N/AMNLFKSIIKWTGVIVYAAFLATVAYAATMPEPIKVYVIYTYKFNERIIEKIYMKKENAQKYCDMYKESHNYTFEELTISE
Ga0208784_10225146F007859N/AMKKLLIILLLCTGCSGTSMFLRYSYNKALENLPPCSKVHAINNDYITYSMVEDSTNSVYVTYTNYYKAYYTTEGSIYKTVKTNARQN
Ga0208784_10225147F010081N/AMQDKIDIIIKDYTEKMKGIDNKKSIPLIVKELDGIVYNMYRELYGLRDIRHNNYNLNSFTADDKKGHCC
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