NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207713_1155713

Scaffold Ga0207713_1155713


Overview

Basic Information
Taxon OID3300025735 Open in IMG/M
Scaffold IDGa0207713_1155713 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)733
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001388Metagenome / Metatranscriptome708Y
F034997Metagenome / Metatranscriptome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0207713_11557131F034997GAGGMCSGDRLVADFIAGTHAWPGLPGELGEHLTTTVNGQWVVWAHKLARQKGDLFVPLTGGPGYPADARAEC
Ga0207713_11557132F001388N/AVYVVESPTFALLSPALTASLGQERARELRAQGAGMDWDQAVAYTLTQATQALSELRSETQ

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