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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025759 Open in IMG/M |
| Scaffold ID | Ga0208899_1005692 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7567 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (68.42%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.12 | Long. (o) | -75.25 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002593 | Metagenome / Metatranscriptome | 545 | Y |
| F002682 | Metagenome / Metatranscriptome | 537 | Y |
| F006589 | Metagenome / Metatranscriptome | 369 | Y |
| F070149 | Metagenome / Metatranscriptome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208899_100569216 | F002682 | N/A | MGKQIGSDDKPVSFRNHVYKKSDSKGANPRPGFYTQDYRDNWDRIFGKKNKEKNNER |
| Ga0208899_100569217 | F006589 | N/A | MKDRIEKRINNIIETNDLTDMQVWSVWCGIGFISAFIIMWII |
| Ga0208899_10056923 | F070149 | AGGAG | MQTIYHIVAEVCARDFPILAKLSVNQGHKFVDIIYEDIVSGDNPTEITEQQIFDYVEEFIAKSITKMLISLEETKDA |
| Ga0208899_10056924 | F002593 | GGAG | MSKLIYSRNGSETTKSIKDASPMIQAIWNQAHSFGANIVRVRAEKNRFGADTGRTFNSFHHEKVSVYKQKDQVHESNALYFSQKIPVTKANTGMQILEIASNLDVQDTLDIIDEIQYYSETSFLGRLWNRIRYGTPMSINS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |