NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1009353

Scaffold Ga0208899_1009353


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1009353 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5570
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041151Metagenome160Y
F084178Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_10093532F041151N/AMTTAQELIDELVKIRSQKQELEDQETWLKEQLQGALALGELDSFEIEQGIYEFGNVKYSRCERNTYKYSKEAEKAINAIKQKDIDSGLASRNMTIYYQLRVNT
Ga0208899_10093538F084178AGGAMAWGQWMVVEFSVEEELRIETQARTVLQSEDSMEVAKLCSALVKQNAYLSQLLRQATKHITELELKEALRDPEDVDPKTAEMAKLLFESCNSDLNHQDDTQGRSLFVTLLLIALTPFFWLIGAFAGLLTTVMRTMTQVIRGLAS
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