NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208899_1010599

Scaffold Ga0208899_1010599


Overview

Basic Information
Taxon OID3300025759 Open in IMG/M
Scaffold IDGa0208899_1010599 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5136
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001521Metagenome / Metatranscriptome679Y
F018089Metagenome237Y
F030892Metagenome184N
F066266Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208899_101059911F001521AGGAGMKLWITEYVDMDDRASIGPYIKAETVGEANRIAIQYGLLVLGEIQELQHDTKVKERTVH
Ga0208899_10105993F066266AGGAGMSILNEHELEKKIVYTIKEKIQEALAYRTYDRRTNKSCHQDYRKTIRDAKDFDELKRIMSEFVDDLMHI
Ga0208899_10105998F030892N/AMSLTASTNYEVQGTIHMENLMEICSETRMERLLNPQMSDHYYTHFHGKYGYRPYEVKVGRKWVTMRNPSHKVRMPLAKYKVHAFLQWRRDAMTDASCKVYNETGKYARPRAWWKDYGFTSNPKDFDYEPSRLAW
Ga0208899_10105999F018089AGGAMTNTTQQTTFEIKNPEAKASYGMVRKIAQQFSKATNCPKDIKWGTIHGHFVSRLNDKTKPLTQGQVVKILSMKALPSADLKAMRSYKKLISIA
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Institute for Fundamental Biomedical Research
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