Scaffold Ga0208899_1021147

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208899_1021147

Scaffold Ga0208899_1021147

Overview

Basic Information
Taxon OID	3300025759 Open in IMG/M
Scaffold ID	Ga0208899_1021147 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3249
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Stieleria → unclassified Stieleria → Stieleria sp. JC731	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013880	Metagenome	267	N
F016522	Metagenome	246	N
F034164	Metagenome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208899_10211472	F016522	GGAG	MPHMVYKLDAVGRRRWLVGQLTAEDMAEGITRKPISRHGWSASQRDAQRFSSEPEARAAADAVEHAAKVLGLCQVMEVA
Ga0208899_10211473	F013880	GGAGG	MGRFIPEELHGNSLTWLYDRMEVGDEARVLRDRETAYKLLRSAWYRRGRREKLARGQDVPWLLLEEAVARVNGEVIEATMVVRVADRAECWETRKKFLKEGVTWAGQ
Ga0208899_10211475	F034164	GGAGG	MSRRADPTPEEIAAEAAKIRAEWPEHRWAKELQEEPPVQAQVVKLDKRWNGVLM

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