Scaffold Ga0208767_1038757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208767_1038757

Scaffold Ga0208767_1038757

Overview

Basic Information
Taxon OID	3300025769 Open in IMG/M
Scaffold ID	Ga0208767_1038757 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2352
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C429	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013406	Metagenome	271	N
F040084	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208767_10387572	F013406	GAG	MNPLAIIAMAACAVSGFGLMLVSDPETDTAGLVSESTVYTAPLSGTVGLDSPSDTSGSDMSVVTTMPPYTGPGCREWADTALRGGFVLDDLWIALQVAELESGCLPGAIGDNGDSFGLMQIHTPSWCKPTKYWPRGYLQTQGMIDDCTELFDPLTNMWVAWHIATKYGWENWSTYERVIG
Ga0208767_10387576	F040084	N/A	TITWRIMTMALRDEIQPKLNKVAGLEKWLDDQPNGEEWYQIIYDLQYSSQSVATLLTKHGFACDHNVIARFRQKHVA

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