Scaffold Ga0208427_1167755

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208427_1167755

Scaffold Ga0208427_1167755

Overview

Basic Information
Taxon OID	3300025771 Open in IMG/M
Scaffold ID	Ga0208427_1167755 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	715
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F038646	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208427_11677551	F002738	AGGA	MRYALLVTMFYPIMSIDTYGLSSEQYEEFFEDNVRFGAKLYLKTCNVLNEEGAGHIDFKTILDIYQEAVYTTNDDCRRYQKSNNPEALKEATADIFGITPTREELMEEIQSVSAKVEALV
Ga0208427_11677552	F038646	N/A	YARQLAMQPPMTKEKDHDYRLQISQDTHWELVKLAAELRMDPESYAEEILNMHAEDAISKRVVAKAYNDPSWVTKLKLECIDEPDGTMSIHIEWDEKDPDLQYWTNLGAKGQENFILNALRFACNDVLSDHVD

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